Organism= testorganism Query= alanyl-tRNA synthetase Length=884 Score E Sequences producing significant alignments: (Bits) Value 01293 1074 0.0 01203 34.3 0.073 00378 31.6 0.48 > 01293 Length=9298 Score = 1074 bits (2778), Expect = 0.0, Method: Compositional matrix adjust. Identities = 567/883 (64%), Positives = 679/883 (77%), Gaps = 5/883 (1%) Frame = -1 Query 3 IPTKFTTSKIRSDFLEFFKNKGHKIVPSAPLVPSNDPTLLFTNSGMVQFKDVFLGAEKRS 62 +P++ T++IRS FL++F++KGH IVPS+ LVP++DPTLLFTNSGMVQFK+VFLG+EK Sbjct 4135 LPSRMKTAEIRSTFLDYFRSKGHTIVPSSSLVPASDPTLLFTNSGMVQFKNVFLGSEKLP 3956 Query 63 EVRVADVQCCLRAGGKHNDLDSVGYTARHHTFFEMLGNWSFGDYFKKEAIMWAWELLTQV 122 VR ADVQ CLRAGGKHNDLDSVGYTARHHTFFEMLGNWSFGDYFK++AI +AWELLT V Sbjct 3955 YVRAADVQRCLRAGGKHNDLDSVGYTARHHTFFEMLGNWSFGDYFKRDAIAYAWELLTDV 3776 Query 123 WELPPERLLVTVYHTDDESYALWRDMVGVPEDRIVRIGDNKGAPFASDNFWQMADTGPCG 182 +LP ++L VTVYHTDDE++ +W VGVP +RIVRIGDNKGAP+ASDNFWQMADTGPCG Sbjct 3775 LKLPKDKLWVTVYHTDDEAFDIWNKEVGVPAERIVRIGDNKGAPYASDNFWQMADTGPCG 3596 Query 183 PCTEIFYDHGEHIpggppgspgEDGDRFIEIWNLVFMQFDRQSDGTLVPLPTPCVDTGMG 242 PCTEIF+DHGE I GGPPGSP EDGDR+IEIWNLVFMQFDR DGTL PLP PCVDTGMG Sbjct 3595 PCTEIFFDHGEEIAGGPPGSPDEDGDRYIEIWNLVFMQFDRAPDGTLSPLPAPCVDTGMG 3416 Query 243 LERLAAILQHVHTNYEIDLFQTLILKAAELTAVADVQNKSLCVIADHSRACAFLIVDGVL 302 LERLAA+LQHVH+NYEIDLF+ LI AA+LT D+ NKSL VIADH RAC+FLIVDGVL Sbjct 3415 LERLAAVLQHVHSNYEIDLFEHLIKVAAQLTHTKDLANKSLRVIADHIRACSFLIVDGVL 3236 Query 303 PSNEGRGYVLRRIIRRALRHGWMLGVRQPFFNNMVPTLIAVMGDAYPKLQAAAESVMRTL 362 PSNEGRGYVLRRIIRRALRHGWMLGVR FF MV L+ MG+AYP+L V L Sbjct 3235 PSNEGRGYVLRRIIRRALRHGWMLGVRGDFFWKMVQPLVEEMGEAYPELAQKQAFVEEAL 3056 Query 363 LAEEERFAETLDVGMKIFNEVAAKVANGVIPGSDAFRLYDTYGFPVDLTADIARERGMRV 422 EE RF ETL+ GM++F+ VAAK +NG IPG+DAFRLYDTYGFPVDLTADIARERG+ V Sbjct 3055 RTEERRFGETLENGMRLFDAVAAK-SNGSIPGADAFRLYDTYGFPVDLTADIARERGLTV 2879 Query 423 DMAGFEAAMTQQRKTARAAGKFGRGVQLSAERAATLSPTVFLGYEQLQADDLRVVALLSD 482 DM GFE +M +Q++ +R GKF Q+ AE A+ L PT FLGY+ L + +VV ++ Sbjct 2878 DMDGFEQSMKEQQERSREGGKFEAKGQMPAELASQLQPTAFLGYDALMSQGSKVVGIVRG 2699 Query 483 GGLTDSASVGDEVIVLTDRTPFYAESGGQVGDIGTLMASDGVRLEVTDTQKLMGQFHGHV 542 G D G+E +V+ DRTPFYAESGGQVGD G L+ + G V DT K+ G F GH Sbjct 2698 GKQYDQLGEGEEALVMLDRTPFYAESGGQVGDTGVLVNTTG-SFAVADTLKMGGVFFGHA 2522 Query 543 ARIV-QGGVKVGDVLSGSVAVARRKMVALNHSATHLLHCALRSVFGTHVVQKGSLVAPDR 601 R + ++VGDV+ +V RR+ + LNHSATHLLH ALR V G HV QKGSLVAP+R Sbjct 2521 GRWSGKQALRVGDVVDANVDGTRRQAIVLNHSATHLLHAALRKVLGEHVTQKGSLVAPER 2342 Query 602 LRFDFSHFEPISAAQMTLIERMVNDEVRANHLVMIEQMGMQAALDAGAMALFGEKYGEHV 661 LRFDFSHF+P+SA ++ IE +VN EVR N + MG A++ GAMALFGEKYG+ V Sbjct 2341 LRFDFSHFKPMSADELRQIEMLVNAEVRRNAAAEVHHMGYNEAIEFGAMALFGEKYGDEV 2162 Query 662 RVVTMGT-SVELCGGTHITRTGDIGLFKIISECGVSSGVRRIEAVTGESALNHVLAEEHR 720 RV+ MG S ELCGGTH+ RTGDIGLFKI+SE GV+SGVRRIEAVTG AL +V EE R Sbjct 2161 RVLRMGEFSTELCGGTHVGRTGDIGLFKIVSEAGVASGVRRIEAVTGAGALAYVADEERR 1982 Query 721 LYEVAGLIGSNANNVVNHIRQLTDRQktlereleklkgklISGTITDLLSMavnvadvkv 780 L E A L+ SN + V +RQL D+QK LERELE L+ K DL S A +VA +KV Sbjct 1981 LGEFAQLLSSNGDEAVEKLRQLFDKQKKLERELESLRAKAAGSATADLASSAKDVAGIKV 1802 Query 781 vaaRLDGLDGKALREALDRLKLQLSDAVIVLAGVTGGKVALVTAVNGPRAMGKVKADTLL 840 +AARL+GLD KALR+++D+LK QL D V++LAG G+V+LV V G +A+G+VKA ++ Sbjct 1801 IAARLEGLDAKALRDSMDQLKQQLGDCVVLLAGAADGRVSLVAGVGG-KALGRVKAGDVV 1625 Query 841 SHVATQINGRGGGRVDFAQGGGEDGPSLRSALDGVATWVKQHL 883 +HVA+QI+G+GGGR D AQGGG D L L+G+A W+ Q L Sbjct 1624 AHVASQIDGKGGGRPDMAQGGGSDTSELPGILEGLADWIGQRL 1496 Query= cell division protein Length=397 Score E Sequences producing significant alignments: (Bits) Value 00621 335 7e-103 01179 102 2e-024 01572 30.0 0.33 01221 28.5 1.6 00073 28.1 1.8 00728 27.3 3.1 00767 26.6 5.7 > 00621 Length=8031 Score = 335 bits (859), Expect = 7e-103, Method: Compositional matrix adjust. Identities = 199/306 (65%), Positives = 243/306 (79%), Gaps = 2/306 (1%) Frame = -1 Query 92 KPNWRERLRGSLFARNINALFSNNPRLDENLLDEIETALITADVGVSTTNAIVDGLRKRM 151 K +WRERL GS FAR++ +LF +P+LD++LLDE+ET LITADVGV + +V+ LRKRM Sbjct 7071 KRSWRERLSGSGFARSLTSLFIRHPKLDDDLLDELETTLITADVGVEASTTLVEDLRKRM 6892 Query 152 KAREFADIQTLLAALRNELITILRPVSKPLIVKRDALPFVFLvvgvngvgktttigKLAK 211 REFAD LLAALR LI +LRPV PL V P+V L VG+NGVGKTTTIGKLA+ Sbjct 6891 HKREFADAGALLAALRQSLIAMLRPVETPLDVS-GLKPYVILTVGINGVGKTTTIGKLAR 6715 Query 212 WFKRDGYSLMLAAGDTFRAAAVAQLQAWGERNSITVIAQKGPNADAASVVYDALQAAKAR 271 ++ +G +MLAAGDTFRAAAV QL+ WGERN + VI+Q G +ADAASV++DALQAA++R Sbjct 6714 RYRDEGRQVMLAAGDTFRAAAVEQLKTWGERNKVPVISQ-GQDADAASVIFDALQAARSR 6538 Query 272 SIEVLIADTAGRLHTQIGLMNELSKIRRVLGKLDSTAPHEVLMVIDGTTGQNALSQLRQF 331 + +VLIADTAGRLHTQ GLM+EL KI RVL K+D+ APHEVLMVIDGTTGQNA+SQ+RQF Sbjct 6537 NADVLIADTAGRLHTQGGLMDELGKIARVLKKIDTAAPHEVLMVIDGTTGQNAVSQVRQF 6358 Query 332 HAAVNVTGIVVTKLDGTAKGGVVFTLAREFGIPIHFISIGEQLEDMHFFDPEAFVDALLP 391 V V+G+VVTKLDGTAKGGVVF LAREFG+PI ++ +GE D+ FD EA+VD LLP Sbjct 6357 RQIVGVSGLVVTKLDGTAKGGVVFALAREFGLPIRYVGLGETATDLRVFDAEAYVDGLLP 6178 Query 392 KTLGNA 397 +LG Sbjct 6177 ASLGQG 6160 Query= chaperonin GroEL Length=547 Score E Sequences producing significant alignments: (Bits) Value 00618 796 0.0 01061 28.9 1.7 > 00618 Length=4924 Score = 796 bits (2056), Expect = 0.0, Method: Compositional matrix adjust. Identities = 428/547 (78%), Positives = 482/547 (88%), Gaps = 0/547 (0%) Frame = -3 Query 1 MAAKEIIFSEKARSRMVHGVNLLANAVKATLGPKGRHVVLDKSFGSPIITKDGVSVAKEI 60 MAAKE+ F E R+RM+ GVN LANAVK TLGPKGR+VV++KSFG+P +TKDGVSVAKEI Sbjct 1802 MAAKEVRFGEDVRARMLKGVNTLANAVKVTLGPKGRNVVIEKSFGAPTVTKDGVSVAKEI 1623 Query 61 ELADKFENMGAQMLKEVASKTNDHAGDGTTTATVLAQALIREGCKAVAAGMNPMDLKRGI 120 ELADK+EN+GAQ++KE ASKT+D AGDGTTTATVLAQA I+EG KAVAAGMNPMDLKRGI Sbjct 1622 ELADKYENIGAQIVKEAASKTSDVAGDGTTTATVLAQAFIQEGLKAVAAGMNPMDLKRGI 1443 Query 121 DKAVIAAVTELKKISKPTSDDKAIAQVATISANSDESIGNIIAEAMKKVGKEGVITIEEG 180 D+AV AAVTELKK+S PT+DDKAIAQV TISANSD +IG+IIA AMKKVGKEGVIT+EEG Sbjct 1442 DQAVNAAVTELKKLSNPTADDKAIAQVGTISANSDANIGDIIATAMKKVGKEGVITVEEG 1263 Query 181 TTLENELDVVEGMQFDRGYSSPYFINNQQSQIVELDNPYILLHDKKISSVRDLLTVLDAV 240 + LENELDVVEGMQFDRGY SPYFINNQQSQ VELD+P+IL+HDKK+S+VR+LL VL+AV Sbjct 1262 SGLENELDVVEGMQFDRGYLSPYFINNQQSQQVELDDPFILIHDKKVSNVRELLPVLEAV 1083 Query 241 AKESKPLLIVAEEVEGEALATLVVNNIRGIIKVCAVKAPGFGDRRKAMLEDMAVLTGGTV 300 AK KPLLIVAEEVEGEALATLVVN IRGI+KV AVKAPGFGDRRKA+LED+A+LT G V Sbjct 1082 AKAGKPLLIVAEEVEGEALATLVVNTIRGIVKVAAVKAPGFGDRRKAILEDIAILTNGVV 903 Query 301 ISEEVGLSLEKATTSHLGKAKKVRVSKENTTIIDGMGDNDAINGRVKQIKTQIEETTSDY 360 ISEEVGL+LEKAT + LG+AK+V ++KENTTIIDG G+ + I R+ QIK QIEET+SDY Sbjct 902 ISEEVGLALEKATITDLGRAKRVVITKENTTIIDGAGEAERIQSRIGQIKAQIEETSSDY 723 Query 361 DREKLQERvaklaggvavikvgaaTEVEMKEKKARVDDALLATRAAVEEGVIPGGGVALI 420 DREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARV+DAL ATRAAVEEGV+PGGGVALI Sbjct 722 DREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVPGGGVALI 543 Query 421 RAITAISNLKGANEDQTHGIQIALRAMEAPLREIVANAGEEPSVILNKVKEGKDNFGYNA 480 R++ A+ LKG N DQ GI I RA+EAPLR IV+NAG+EPSV+LNKVKEG NFGYNA Sbjct 542 RSLKALEGLKGQNTDQDLGIAITRRALEAPLRAIVSNAGDEPSVVLNKVKEGNGNFGYNA 363 Query 481 ATGEFGDMVNLGILDPTKVTRSALQNAASIAGLMITTEAMVAEAPKKDEPTPPAAgggmg 540 A GEFGDM+ GILDPTKVTRSALQ AAS+AG +ITTEA V E PKKDE A GGMG Sbjct 362 ANGEFGDMIAFGILDPTKVTRSALQFAASVAGSIITTEAAVTEVPKKDEGHSHGAPGGMG 183 Query 541 gmggmDF 547 GMGGMDF Sbjct 182 GMGGMDF 162 Query= dimethyladenosine transferase Length=265 Score E Sequences producing significant alignments: (Bits) Value 01768 279 2e-085 01095 35.4 0.005 00969 28.1 1.1 00404 25.8 5.8 00641 25.8 6.5 > 01768 Length=6320 Score = 279 bits (713), Expect = 2e-085, Method: Compositional matrix adjust. Identities = 150/257 (58%), Positives = 184/257 (72%), Gaps = 1/257 (0%) Frame = +1 Query 5 LFNTPAKKAFGQHFLVDRYYIDRIIHAINPQPNDHIVEIGPGQGAITLPLLKCCGSLTAI 64 N KK+FGQHFL ++ YI+RI+ AI+P+ +D +VEIGPG+GA+TLPLL G LTAI Sbjct 2020 FMNARPKKSFGQHFLHEKRYIERIVSAISPRADDFVVEIGPGEGALTLPLLAAAGKLTAI 2199 Query 65 ELDRDLIAPLTAAATPIGKLDIIHRDVLTVDLSILA-KQGNKKLRLVGNLPYNISSPILF 123 ELD DLI L A A +G+L IIH DVL VD + LA + G ++LR+ GNLPY ISSPILF Sbjct 2200 ELDTDLIPGLQARAASVGELSIIHSDVLKVDFTALAHRHGVERLRVAGNLPYYISSPILF 2379 Query 124 HVLQQAAIIADMHFMLQKEVVDRMAAPPGSKVYGRLSVMLQAWCEVTTMFVVPPDAFQPP 183 H ++ AA I DMHFMLQKEVVDRMAA PGSKVYGRLSVMLQ C V +FVVPP AF+PP Sbjct 2380 HCVEHAAAIQDMHFMLQKEVVDRMAAEPGSKVYGRLSVMLQLVCRVEPLFVVPPGAFRPP 2559 Query 184 PKVNSAITRLVPRDPTTIRIADTKRFSDIVRAAFGQRRKTLRNSLADICTPAHFEHAGIR 243 PKV+SA+ RLVP P + AD +R IV+AAF QRRKTL N+L ++ A + Sbjct 2560 PKVDSAVVRLVPLGPDQLPDADPERIHAIVKAAFAQRRKTLSNALKNVMDSNAIMAADVD 2739 Query 244 TNARAEQLEVTEFIALA 260 ARAE L +++ LA Sbjct 2740 PKARAETLSPQDYVRLA 2790 Query= DNA gyrase subunit A Length=893 Score E Sequences producing significant alignments: (Bits) Value 00015 809 0.0 00703 513 5e-175 00049 378 1e-111 00066 50.4 6e-007 00895 29.6 1.5 Repeat-07678 27.7 3.9 01163 28.5 4.0 > 00015 Length=2580 Score = 809 bits (2090), Expect = 0.0, Method: Compositional matrix adjust. Identities = 418/611 (68%), Positives = 497/611 (81%), Gaps = 36/611 (6%) Frame = +3 Query 265 YQVNKARLIEKIAELVKEKRIDGISELRDESDKDGMRIYIEVKRGESAEVVLNNLYQQTQ 324 YQVNKARLIEKIAELVKEK+++GISELRDESDKDGMR+ IE++R +VVLNNL+QQTQ Sbjct 3 YQVNKARLIEKIAELVKEKKLEGISELRDESDKDGMRVVIEIRRDSMGDVVLNNLFQQTQ 182 Query 325 MESVFGINMVALVDGRPQLLNLKQILQAFIRHRREVVTRRTIFELRKARARAHVLEGLTV 384 ++ FGINMVAL+DG+P+LLNLK IL+AFIRHRREVVTRRTIF+LRKARARAH+LEGLTV Sbjct 183 LQVTFGINMVALLDGQPRLLNLKDILEAFIRHRREVVTRRTIFDLRKARARAHILEGLTV 362 Query 385 ALANIDEMIHLIKTSPSPQEAKERLLAKTWAPGLVGTLLSASGGEASRPEDLPQGVGLIG 444 ALANIDEMI LI+TS SP EA+ER+LA+ W PG+V TLL A+G EASRPED+ GL Sbjct 363 ALANIDEMIELIRTSASPAEARERMLARKWQPGMVATLLEAAGAEASRPEDMDPREGLKA 542 Query 445 DSYQLTEVQVRQILEMRLHRLTGLEQDKLAEEYQQLLEIIVGLIRILESPDVLLQVIRDE 504 + YQL+EVQ ++IL MRLHRLTGLEQ+KL++EY+Q+LE I GLI ILE P LL VIRDE Sbjct 543 EGYQLSEVQAQEILAMRLHRLTGLEQEKLSDEYRQVLETIRGLIEILEDPARLLTVIRDE 722 Query 505 LLKIREEYGDVRRTEIRHSEEDLDILDLIAPEDVVVTLSHAGYAKRQPVSayraqkrggr 564 L ++EE+GD RRTEI+HS+EDL++LDLIAPEDVVVTLSH GY KRQP S YRAQ+RGG+ Sbjct 723 LEAVKEEFGDKRRTEIQHSQEDLNVLDLIAPEDVVVTLSHTGYVKRQPASTYRAQRRGGK 902 Query 565 graaVTTKEEDFIDHLWLVNTHDTLLTFTSTGKVFWLSVYQLPEAGSNARGRPIINWIPL 624 GR+A K+EDF++ LW+VNTHDTLLTFTS+G+V+WL+VYQLPE+G NARG+P++N +PL Sbjct 903 GRSASALKDEDFVEQLWVVNTHDTLLTFTSSGRVYWLNVYQLPESGPNARGKPMVNLLPL 1082 Query 625 EPGEKVQAVLPVREYAENHYVFFATRQGTVKKTPLSEFAFRLARGKIAINLDQGDALIGV 684 GEKVQAVLPVREY E+ +VFFAT+QGTVKKTPL+EFAF+L +GKIAINLD+GDAL+ V Sbjct 1083 GQGEKVQAVLPVREYTEDQFVFFATKQGTVKKTPLTEFAFQLQKGKIAINLDEGDALVNV 1262 Query 685 ALTDGERDVLLFASNGKTVRFSENTVRSMGRTATGVRGIKLTEGEEVVSLIIAEPATGVD 744 ALT G DVLLFASNGKTVRF E+ VRSMGRTATGVRG+KL EG EVVSLI+A Sbjct 1263 ALTGGNSDVLLFASNGKTVRFDESEVRSMGRTATGVRGMKLGEGAEVVSLIVA------- 1421 Query 745 MLEEAEETADDDIQTANTAESVHIDPTQDDILCILTATENGYGKCTPLAHYPRKGRGTQG 804 A+ D ILTATE GYGK T L +P+KGRGTQG Sbjct 1422 --------AEGD---------------------ILTATERGYGKRTMLDEFPKKGRGTQG 1514 Query 805 VIGIQTTERNGRLVAAVLLGATDEVLLISDGGTLVRTRGSEISRVGRNTQGVTLIRLSNG 864 VIGIQ +ERNG LVAA+ E++LISD GTLVRTR +E+S++GRNTQGVTLIRL + Sbjct 1515 VIGIQCSERNGNLVAAIQATEAHELMLISDQGTLVRTRVAEVSQLGRNTQGVTLIRLPSD 1694 Query 865 EKLQAVERLDA 875 EKL +V RLDA Sbjct 1695 EKLVSVVRLDA 1727 Query= DNA gyrase subunit B [Xy fast 9a5c] Length=814 Score E Sequences producing significant alignments: (Bits) Value 00735 681 0.0 00178 395 2e-130 00603 234 4e-068 00188 171 1e-047 Repeat-08211 51.6 1e-007 00639 30.4 0.96 01321 29.6 1.5 > 00735 Length=3864 Score = 681 bits (1757), Expect = 0.0, Method: Compositional matrix adjust. Identities = 369/479 (77%), Positives = 417/479 (87%), Gaps = 0/479 (0%) Frame = -1 Query 16 YDSSKITVLRGLDAVRKRPGMYIGDVHDGTGLHHMVFEVVDNSVDEALAGHADSILVKIH 75 YDSS I VL+GL+AVRKRPGMYIGD DGTGLHHMVFEVVDNS+DEALAG+ D + V I Sbjct 1455 YDSSNIKVLKGLEAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGYCDHVTVTIL 1276 Query 76 VDGSVSVSDNGRGIPVDIHKEEGVSAAEVILTVLHAGGKFDDNSYKvsgglhgvgvsvvN 135 DGSVSVSDNGRGIPVD H EEG S AEV++TVLHAGGKFD NSYKVSGGLHGVGVSVVN Sbjct 1275 DDGSVSVSDNGRGIPVDTHPEEGRSTAEVVMTVLHAGGKFDANSYKVSGGLHGVGVSVVN 1096 Query 136 ALSERLWLDIWRDGYHYQQEYVLGEPQYPLKQLGVSAKRGTTLRFKPAKEIFSDVEFHYE 195 ALS LWL I+R+G YQQEY GEP YP+K +G S KRGTT+RF P+ F++VEFHY+ Sbjct 1095 ALSSHLWLTIYREGKEYQQEYAHGEPLYPIKPVGDSTKRGTTVRFLPSTGTFTNVEFHYD 916 Query 196 NLAKRLRELSFLNSGLQVSLIDERGEGRRDDFHYEGGIRSFVEHLAQLKTPLHSNVISVT 255 LAKRLREL+FLNSG+ + L DERGEGR D F YEGGIRSFV+HLAQLKT LH NVIS++ Sbjct 915 ILAKRLRELAFLNSGVTIDLKDERGEGRSDRFAYEGGIRSFVQHLAQLKTALHPNVISLS 736 Query 256 GEHNGIVVDVALQWTDAYQETMYCFTNNIPQKDGGTHLAGFRAALTRTLGNYIEQNGIAR 315 GI V++A+QWTDAYQETMYCFTNNIPQ+DGGTHL GFRAALTR+L +YIE+ G+A+ Sbjct 735 AMQEGISVELAMQWTDAYQETMYCFTNNIPQRDGGTHLTGFRAALTRSLQSYIEKEGLAK 556 Query 316 QAKITFSGDDMREGMIAVLSVKVPEPSFSSQTKEKLVSSDVKPAVEATFGLRLEEFLQEN 375 AK+T SGDDMREGMIAVLSVKVP+P FSSQTK+KLVSS+VK AVE +L EFL E+ Sbjct 555 NAKVTLSGDDMREGMIAVLSVKVPDPKFSSQTKDKLVSSEVKTAVEQAVNEKLGEFLLEH 376 Query 376 PNEARAIAGKIVDaarareaarkarDLTRRKGVLDIAGLPGKLADCQEKDPAMSELFIVE 435 PNEA+AIA K+VDAARAREAARKAR++TRRKG LDIAGLPGKLADCQEKDPA+ ELF+VE Sbjct 375 PNEAKAIASKVVDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEKDPALCELFLVE 196 Query 436 GDSAGGSAKQGRNRKNQAVLPLRGKILNVERARFDRMLSSAEVgtlitalgtgigKDEY 494 GDSAGGSAKQGRNRK QAVLPL+GKILNVE+ARFD+ML+SAEVGTLITALGTGIGK+EY Sbjct 195 GDSAGGSAKQGRNRKTQAVLPLKGKILNVEKARFDKMLASAEVGTLITALGTGIGKEEY 19 Query= DNA polymerase I Length=923 Score E Sequences producing significant alignments: (Bits) Value 00976 1119 0.0 00408 130 3e-031 > 00976 Length=9530 Score = 1119 bits (2895), Expect = 0.0, Method: Compositional matrix adjust. Identities = 584/934 (63%), Positives = 690/934 (74%), Gaps = 17/934 (2%) Frame = -2 Query 1 MSKLVLIDGSSYLYRAFHALPPLSNAAGEPTGALFGVVNMLRTTLKERPDYAAFVIDAPG 60 M+KL+LIDGSSYLYRAFHALPPL+N+ GEPTGALFGVVNMLR TLK +PDY AFV DAPG Sbjct 7678 MAKLILIDGSSYLYRAFHALPPLTNSQGEPTGALFGVVNMLRATLKAKPDYVAFVSDAPG 7499 Query 61 KTFRDALDSEYKMHRPPMPDDLRVQVEPMCGIVQALGIDILCIDGVEADDVIGTLALAAV 120 TFR+ L +YK +RPPMPDDLR QV+PM IV ALG IL + GVEADDVIGTL A Sbjct 7498 PTFRNQLYDQYKTNRPPMPDDLRAQVDPMLAIVGALGFPILRVAGVEADDVIGTLTEQAH 7319 Query 121 ADGIAVTISTGDKDFAQLVRPGVELVNTMTGSRMDSAMAVINKFGVAPDQIIDFLALMGD 180 A GI V ISTGDKD AQLVRPGV LVNTMT + DSA V++KFGV P QI+DFL+L GD Sbjct 7318 AQGIEVEISTGDKDLAQLVRPGVTLVNTMTNTTTDSA-GVMDKFGVQPSQIVDFLSLTGD 7142 Query 181 AVDNVPGVDKCGPKTAAKWLAEYGSLDAVIANADKIKGKIGDnlrvvlprlllnralITI 240 VDNVPGV KCGPKTAAKWLAEYG+LD +IANADK+ GKIG++LR LP+L L+R L+TI Sbjct 7141 TVDNVPGVPKCGPKTAAKWLAEYGTLDNLIANADKVGGKIGESLRAALPQLPLSRDLVTI 6962 Query 241 KTDVVLEKCPQDLALRERDTEALRGFYQRYGFTQALKELDGGSVAVTVAEQEPGRGRNAG 300 K DV LE+ L RER EALR Y RY F ALK++D + A P R +AG Sbjct 6961 KLDVPLEESVSQLTFRERHDEALRELYTRYEFKAALKDMDAEAGATPPVGAHPVR--DAG 6788 Query 301 FHVAPDASV-------AMEINPA----LSAPGEYETIFTVEQLQDWIVRLRVAGQFALDT 349 V+ +A+ A+ P L+ G+YE + T Q + W+ ++ A + DT Sbjct 6787 GAVSGNATGTASRAQGALPQEPEHAANLAMAGQYELVTTQPQFESWLAKIATAPLVSFDT 6608 Query 350 ETDSLDPMQAVLIGLSFAAEVGCAAYLPFGHDYPGAPVQLDRGQALALLQPLLEDAAVRK 409 ET S+D MQA ++GLS + E G A Y+P HDYPGAP QL R Q LA L+P EDA K Sbjct 6607 ETTSIDSMQADIVGLSLSVEPGHACYVPLAHDYPGAPAQLSREQVLATLKPFFEDATRPK 6428 Query 410 VGQHGKYDMHVLRRYGIVLAGYADDTLLESFVLTSGHARHDMDTLARRHLGYETMKYVDL 469 +GQH KYD+++L YGI L G D++LES++ + RHDMD+LAR++LG ET+KY + Sbjct 6427 MGQHAKYDINILSNYGIHLRGLKHDSMLESYIWNATATRHDMDSLARKYLGVETIKYEQV 6248 Query 470 VGKGAKQIPFSHVGVQEATRYAAEDADITLRLHCVLAPKLLAEPSLERVYREIEMPLVAV 529 GKGAKQIPFS V + A RYAAEDADITLRLH L PKL +EPSL VY IE+PL+ V Sbjct 6247 AGKGAKQIPFSQVDLDTACRYAAEDADITLRLHHALWPKLESEPSLRSVYENIEIPLIPV 6068 Query 530 LERIEANGVQIDAEELYKQSADLSRRMVIAQQKAMDLAGRHFNLDSPKQLQVLLFDELKL 589 L +E GV ID EL QS L +RM+ QQ+A AG FNLDSPKQLQ +LFDEL L Sbjct 6067 LASMEQRGVLIDVSELRMQSQQLGKRMLELQQEAWKGAGHEFNLDSPKQLQAVLFDELGL 5888 Query 590 PVVVKTPKGQPSTNEEALEAIVDQHALPRVILEYRSLAKLRNTYTEKLPEMIHPHTGRVH 649 VKTP GQPSTNEEAL AI D HALPR+IL+YR LAKLR+TYT+KL EM++P TGRVH Sbjct 5887 SAKVKTPTGQPSTNEEALAAIADDHALPRLILDYRGLAKLRSTYTDKLAEMVNPRTGRVH 5708 Query 650 TNYHQAGAATGRLSSSDPNLQNIPIRTDDGRRIRRAFVAPSGRKLIACDYSQIELRIMAH 709 T+YHQ ATGR+SSSDPNLQNIPIRT++GRRIR+AFVAP G ++A DYSQIELRIMAH Sbjct 5707 TSYHQGSVATGRVSSSDPNLQNIPIRTEEGRRIRQAFVAPQGWVVLAADYSQIELRIMAH 5528 Query 710 LSGDAGLVDAFESGVDVHCAIAAEVFGRGIDEVTLNERRAAKAINFGLIYGMSAFGLARQ 769 LSGD GLV AF+ G DVH A AAEVFG ++V+ N+RRAAKAINFGL+YGMSAFGLARQ Sbjct 5527 LSGDEGLVKAFKEGGDVHRATAAEVFGLKPEDVSANQRRAAKAINFGLMYGMSAFGLARQ 5348 Query 770 LGISRGEAQDYIALYFDRFAGVRDFMENTRQQARDRGYVETVFGRRLYLNSIASGNQTQR 829 LG+ RGEA DY+A YF R+ GV FME TRQQA GYVET+FGRRLYL ++ S NQ R Sbjct 5347 LGVDRGEASDYMARYFARYPGVHAFMEATRQQAHRDGYVETLFGRRLYLENLQSRNQALR 5168 Query 830 AGAERAAINAPMQGTAADIIKRAMVAVDGWLGVGGHRERALMILQVHDELVFEADEGFVP 889 AGAERAA+NAPMQGTAADIIKRAM+AV WL R+ A M++QVHDELVFE + V Sbjct 5167 AGAERAAVNAPMQGTAADIIKRAMLAVHDWLQP---RDDAHMLMQVHDELVFEVRQDVVE 4997 Query 890 TLVHEVSARMAAAAQLRVPLVVDVGVGHHWDEAH 923 + V ARM+ AA+L VPL+V+ GVG +WDEAH Sbjct 4996 EVRAGVVARMSGAAELSVPLLVEAGVGKNWDEAH 4895 Query= DNA-directed RNA polymerase subunit beta' Length=1407 Score E Sequences producing significant alignments: (Bits) Value 00376 2211 0.0 > 00376 Length=7749 Score = 2211 bits (5730), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1125/1384 (81%), Positives = 1234/1384 (89%), Gaps = 1/1384 (0%) Frame = +2 Query 1 MKDLLNLFNQQRQTLDFDAIKIGLASPALIRSWSFGEVKKPETINYRTFKPERDGLFCAA 60 MKDLLNLFNQQR DFDAIKI LASP LIRSWS+GEVKKPETINYRTFKPERDGLFCAA Sbjct 2222 MKDLLNLFNQQRTAPDFDAIKIALASPELIRSWSYGEVKKPETINYRTFKPERDGLFCAA 2401 Query 61 IFGPIKDYECLCGKYKRMKHRGVVCEKCGTEVTLAKVRRERMGCIELASPVAHIWFLKSL 120 IFGP+KDYECLCGKYKRMKHRGVVCEKCGTEVTLAKVRRERMG IELASP AHIWFLKSL Sbjct 2402 IFGPVKDYECLCGKYKRMKHRGVVCEKCGTEVTLAKVRRERMGHIELASPTAHIWFLKSL 2581 Query 121 PSRIGLMLDMTLRDIERVLYFEAYVVTEPGLTPLERRQLLTEEQYLQARQEHADDFDASM 180 PSRIGLMLDMTLRDIER+LYFEA+VV +PGLT LER QLL+E+QYL+A +EH D+FDA M Sbjct 2582 PSRIGLMLDMTLRDIERILYFEAFVVIDPGLTALERGQLLSEDQYLEAVEEHGDEFDARM 2761 Query 181 GAEAVYELLRMIDLQSEMARLREEIVVTGSetklkrltkriklieAFIESGNRPEWMILT 240 GAEAVYELL+ +DL E+ RL+EEI T SETKLKRLTKR+KLIEAF+ESGN+PEWM+LT Sbjct 2762 GAEAVYELLKSLDLPGEVIRLKEEIGSTNSETKLKRLTKRVKLIEAFLESGNKPEWMVLT 2941 Query 241 vlpvlppdlrplvpldGGRFATSDLNDLYrrvinrnnrlcrllELSAPDIIVRNEKRMLQ 300 VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRL RLLEL+APDIIVRNEKRMLQ Sbjct 2942 VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLRRLLELNAPDIIVRNEKRMLQ 3121 Query 301 ESVDALLDNGRRGRAITGTNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSARSVIIVGPN 360 ESVDALLDNGRRGRAITGTNKR LKSLADMIKGKQGRFRQNLLGKRVDYS RSVI+VGP Sbjct 3122 ESVDALLDNGRRGRAITGTNKRALKSLADMIKGKQGRFRQNLLGKRVDYSGRSVIVVGPT 3301 Query 361 LRLHQCGLPKKMALELFKPFVFAKLQRRGLATTIKGAKKLVEREEAEVWDILEEVISEHP 420 LRLHQCGLPKKMALELFKPF+FAKLQ RG ATTIK AKKLVEREE +VWDILEEVI EHP Sbjct 3302 LRLHQCGLPKKMALELFKPFIFAKLQARGEATTIKAAKKLVEREEGQVWDILEEVIREHP 3481 Query 421 VVLNRAPTLHRQGIQAFEPVLIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQLEA 480 V+LNRAPTLHR GIQAFEP LIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLS+EAQLEA Sbjct 3482 VMLNRAPTLHRLGIQAFEPKLIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSIEAQLEA 3661 Query 481 RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMSRALENKKGEGMVFANTSELKRAYDNS 540 RALMM+TNNILSPANGEPIIVP+QDVVLGLYYM+R L N KG GMVF+ E++RAYDN Sbjct 3662 RALMMATNNILSPANGEPIIVPTQDVVLGLYYMTRELVNAKGNGMVFSGIGEVRRAYDNR 3841 Query 541 VVELHAKVKVRITEIETDDQGLRNKASSIVDTTVGRALLSEILPEGLPFVLVNTEMTKKN 600 VELHAKVKVRI +++ D+ G R + +SIVDTTVGRALL EI+PEGLPF L NTE+TKKN Sbjct 3842 AVELHAKVKVRINQVQIDEDGNRTEQTSIVDTTVGRALLLEIMPEGLPFALANTELTKKN 4021 Query 601 ISRLINSSYRMLGLKETVVFADKLMYTGYAYATRAGVSICIDDMLIPIEKKEILGEAEQE 660 ISRLIN YR LGLK+TV+F D+LMYTG+ +ATRAG+SI IDDM+IP EKK IL EAE+E Sbjct 4022 ISRLINQCYRRLGLKDTVIFGDQLMYTGFRFATRAGISIGIDDMIIPDEKKPILEEAEKE 4201 Query 661 VLEIQEQYQSGLVTAGERYNKVVDIWSRTNERIAKAMMDTIGTERVVNADGEIVDQKSMN 720 V+EIQEQYQSGLVTAGERYNKVVDIWSRTNE +AKAM+D IGTE+V +A+G+ V+QKSMN Sbjct 4202 VVEIQEQYQSGLVTAGERYNKVVDIWSRTNELVAKAMIDGIGTEKVTDAEGKTVNQKSMN 4381 Query 721 SLYIMADSGARGSPQQIRQLAAMRGLMVRPDGSIIETPIKANFREGLSVQEYFNSTHGAR 780 SLYIMADSGARGS QIRQLA MRGLM RPDGSIIETPIKANFREGL+V +YFNSTHGAR Sbjct 4382 SLYIMADSGARGSVAQIRQLAGMRGLMARPDGSIIETPIKANFREGLNVLQYFNSTHGAR 4561 Query 781 KGLADTALKTANSGYLTRRLVDVTQDLCVVQLDCGTAGGLTMTPIVEGGDVVEPLKDRVL 840 KGLADTALKTANSGYLTRRLVDV QD+ + DCGT G+TM PIVEGGDVVEPL+DRVL Sbjct 4562 KGLADTALKTANSGYLTRRLVDVAQDVVITFDDCGTDNGVTMQPIVEGGDVVEPLRDRVL 4741 Query 841 GRVVAEDVLLPGNDDEPIVTRSTLLDEQWVAKLEEAGVQSVKVRSPITCESPFGVCALCY 900 GRV EDV PG D+EP+VTR TLLDE V KL++AGVQSVKVRSPITC + GVCALCY Sbjct 4742 GRVALEDVYGPGEDNEPLVTRDTLLDEALVEKLDKAGVQSVKVRSPITCAADHGVCALCY 4921 Query 901 GRDLARGHLVNMGEAVGVIAAQSIGEPGTQLTMRTFHIGGTALSAAAIDNITVKTSGSVK 960 GRDLARGHLVNMGEAVGV+AAQSIGEPGTQLTMRTFHIGG A AAA+DN+TVKT+G++K Sbjct 4922 GRDLARGHLVNMGEAVGVVAAQSIGEPGTQLTMRTFHIGGAASRAAAVDNVTVKTTGTLK 5101 Query 961 FTNLKYVEHANGTLVAVSRSGEISVLDTHGRERERYKLPYGATINVKDMAEVKSGQILAN 1020 F NLK V H G LVAVSRSGE+SV+D +GRERERYK+PYGATI VKD VK+GQ +AN Sbjct 5102 FNNLKTVHHNQGHLVAVSRSGEVSVIDANGRERERYKVPYGATIAVKDGDPVKAGQAVAN 5281 Query 1021 WDPHNHPIVSEVAGFVRFIDFVDGVTVIEKTDDLTGLSSREIADLKRRGSQGKDLRPLVR 1080 WDPH HPIVSEVAG VRFIDF+DG+TV +TD+LTGL S + D KRRG+ KDLRP+VR Sbjct 5282 WDPHTHPIVSEVAGTVRFIDFIDGITVQSQTDELTGLESAVVTDPKRRGTAAKDLRPIVR 5461 Query 1081 IVDKKGNDLTIPGTDLSAQYLLPPRSIVNLQDGAPVGIGDVVAKIPQEASKTRDITGGLP 1140 + D KG +L +PGTD+ AQY+LP +IV++Q+GA VG+GDVVA+IPQE SKTRDITGGLP Sbjct 5462 LEDAKGRELKLPGTDVPAQYMLPAGAIVSIQNGAQVGVGDVVARIPQETSKTRDITGGLP 5641 Query 1141 RVADLFEARRPKDPAILAERSGVISFGKDTKGKQRLIIKDADGSEHEELIPKYRQIIVFE 1200 RVADLFEAR+PK+PAILAERSGVISFGKDTKGKQRLIIKD DG+EHEELIPK+RQ+IVFE Sbjct 5642 RVADLFEARKPKEPAILAERSGVISFGKDTKGKQRLIIKDVDGNEHEELIPKWRQVIVFE 5821 Query 1201 GEHVTKGETIVDGEPSPQDILRLLGIEPLAAYLVKEIQDVYRLQGVKINDKHIEVITRQM 1260 GEHV KGETIVDGEPSP DILRLLG+EPLAAYLVKEIQDVYRLQGVKINDKHIE I RQM Sbjct 5822 GEHVEKGETIVDGEPSPHDILRLLGVEPLAAYLVKEIQDVYRLQGVKINDKHIEAIIRQM 6001 Query 1261 LRKVEIVDQGNSKFLNGEQVERQRVIDENAKLIARNELPAKYNPVLLGITKASLATESFI 1320 LRKVEI D G S +L GEQVER R+ EN + IAR E PA++ VLLGITKASLATESFI Sbjct 6002 LRKVEITDPGESHYLRGEQVERVRINGENDRAIARGERPAEFQSVLLGITKASLATESFI 6181 Query 1321 SAASFQETTRVLTEAAVRGTRDNLRGLKENVIVGRLIPAGTGQTYHSQRRYSSVGLTESE 1380 SAASFQETTRVLTEAAVRGTRD LRGLKENVIVGRLIPAGTG YH+ R + GLT SE Sbjct 6182 SAASFQETTRVLTEAAVRGTRDTLRGLKENVIVGRLIPAGTGLAYHAAR-HRQGGLTASE 6358 Query 1381 METL 1384 +ETL Sbjct 6359 LETL 6370 Query= preprotein translocase subunit SecA Length=914 Score E Sequences producing significant alignments: (Bits) Value 01768 884 0.0 00808 451 2e-140 01196 29.6 1.7 00651 28.5 3.9 01274 27.7 6.2 01011 27.3 8.6 00628 27.3 9.8 > 01768 Length=6320 Score = 884 bits (2284), Expect = 0.0, Method: Compositional matrix adjust. Identities = 452/681 (66%), Positives = 549/681 (81%), Gaps = 5/681 (1%) Frame = -1 Query 235 LYIRVNRIIPHLTRQENEEAEGDYWVDEKGKQVHLSEVGMERAEDLLRQAGILEEGDDSL 294 LY+ VN+I+P + RQE E++ GDY+VDEK KQVHLSE GM A++LLRQAG+++ D L Sbjct 6317 LYLAVNKIVPKMIRQEKEDSAGDYFVDEKQKQVHLSEEGMSHADELLRQAGVID-ADSGL 6141 Query 295 YAAQNLSVVhhlnaalrahalYQRDVDYIVRDGEVVIVDEFTGRTLAGRRWSDGLHQAIE 354 Y ++NL+VVHHLNAALRA+A+Y RDVDYIVRDGEV+IVDEFTGRTLAGRRWSDGLHQA+E Sbjct 6140 YDSKNLAVVHHLNAALRANAIYHRDVDYIVRDGEVIIVDEFTGRTLAGRRWSDGLHQAVE 5961 Query 355 AKEGVPVQRENQTLASITFQNLFRIYKKLSGMTGTADTEAYEFQSIYGLEVMVIPTNRPT 414 AKEGVP+QRENQTLA+ITFQNLFR+YKKL+GMTGTADTEAYEFQ IYGLEV+VIPT++P Sbjct 5960 AKEGVPIQRENQTLATITFQNLFRMYKKLAGMTGTADTEAYEFQQIYGLEVVVIPTHKPM 5781 Query 415 VRKDYPDQVFLNRSSKFNAVLEDIKDCAKRGQPVLVGTTSIEISEMLSEHLRKARVKHEV 474 +R+D D VFL + +K+ AV+EDIKDC KRGQPVLVGTTSIE+SE+LS+ LRK ++ HEV Sbjct 5780 IRQDNSDMVFLGQQAKYRAVIEDIKDCHKRGQPVLVGTTSIEVSELLSDLLRKEKIAHEV 5601 Query 475 LNAKQHEREATIVANAGLPGAVTIATNMAGRGTDIVLGGSLDTVLAELDPDATEEDRFRV 534 LNAKQHEREA IVA AG PG+VTIATNMAGRGTDIVLGGSL+ LA+L DAT+ DR +V Sbjct 5600 LNAKQHEREAHIVAQAGAPGSVTIATNMAGRGTDIVLGGSLEAALAQLPEDATDADRSKV 5421 Query 535 KTAWNRRHEAVKAAGGLHIIGTERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDSLMRI 594 K W + HE V AAGGLHI+GTERHESRRIDNQLRGR+GRQGDPGSSRFYLSLED+L+RI Sbjct 5420 KAEWKKLHEKVLAAGGLHIVGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLEDNLLRI 5241 Query 595 FASEWVQKVMRLMGMKEGDVIEDRRVTRQIERAQRKVEAHNFDIRKNLLDYDDVNNEQRK 654 FA +WV + MR+ GMKE D +EDR V+RQIE+AQRKVE HNFDIRK+LL++DDV N+QRK Sbjct 5240 FAGDWVGRWMRMFGMKEEDALEDRMVSRQIEKAQRKVEQHNFDIRKHLLEFDDVANDQRK 5061 Query 655 VVYAQRDELLDAESIKENIDSIRHEVIDALVTRFVPEHSIDEQWDLPGLQATLQSEWGLH 714 V+YAQRDELL + + + I IR +V+ LV R VP SIDEQWD+ GL L+SE+GL Sbjct 5060 VIYAQRDELLVVDDVSDTIADIRDDVVSELVHRHVPADSIDEQWDIAGLDRELESEFGLS 4881 Query 715 LPLIEMLKGREEVDAERIAFLVQDAVDKHCAEREASIGAETMRALEKHVMLTVLDQGWKE 774 + L + + E+D + I V+ AV++ +E G ETMR LEKH+ML+V+D WKE Sbjct 4880 IDLKAWIDQQHEIDDKMILEHVRQAVEQLFKAKEQQTGVETMRQLEKHIMLSVVDNAWKE 4701 Query 775 HLATMDYLRQGIHLRGYAQKQPKQEYKREAFELFSEMLEHVKREVIASLARVRIRSeeem 834 HLA+MDYLRQGI+LRGYAQKQPKQE+KRE+FELFS ML+ +K EV+ LARVR+RSEEE+ Sbjct 4700 HLASMDYLRQGIYLRGYAQKQPKQEFKRESFELFSSMLDRIKAEVVQMLARVRVRSEEEV 4521 Query 835 aaleeqerrqVDTLLRQSQFQHQEAGGYGTGDEAVSLQRQPAGQRAAIAQVI-RDTPKVG 893 AA+E +++R D L RQ GG G + + AG AA A +D P+VG Sbjct 4520 AAMEAEQQRLADRLQRQ---MLASGGGAPVGALGMDAEAVAAGSMAAPAGAPQQDGPRVG 4350 Query 894 RNDPCPCGSGKKYKHCHGLVT 914 RNDPCPCGSGKKYKHCHG ++ Sbjct 4349 RNDPCPCGSGKKYKHCHGQLS 4287